Basic Information
Locus ID:
nbisL1-mrna-20531
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 7567777 | 7569792 | - | nbisL1-mrna-20531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 74,108.76 Da | 55.38 | 94.20 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 206 | 243 | 4.79803E-8 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 400 | 641 | 1.1E-39 | IPR000719 |
| Pfam | PF01476 | LysM domain | 207 | 250 | 6.7E-8 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 205 | 250 | 3.53E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 349 | 642 | 5.06E-64 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 440 | 662 | 4.2E-51 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 205 | 259 | 1.3E-9 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 349 | 438 | 4.6E-14 | - |
| SMART | SM00257 | LysM_2 | 206 | 250 | 7.9E-10 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 205 | 249 | 11.907313 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 327 | 649 | 31.523779 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_034931353.1 | LOW QUALITY PROTEIN: protein LYK5 [Populus alba] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835MZW7 | Protein LYK5-like OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf05G0198500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology