Basic Information
Locus ID:
nbisL1-mrna-20505
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
BAH and coiled-coil domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 1326314 | 1329674 | - | nbisL1-mrna-20505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 26,527.88 Da | 54.93 | 68.84 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 3 | 105 | 1.4E-19 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 110 | 158 | 1.6E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 100 | 160 | 2.21E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 103 | 7.4E-25 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 171 | 1.3E-20 | IPR013083 |
| SMART | SM00249 | PHD_3 | 110 | 157 | 4.9E-10 | IPR001965 |
| SMART | SM00439 | BAH_4 | 1 | 106 | 6.1E-31 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 108 | 159 | 9.2141 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 1 | 106 | 21.231077 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 111 | 156 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_021629470.1 | - | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8CDB1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology