Basic Information
Locus ID:
nbisL1-mrna-20504
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 1320350 | 1324422 | - | nbisL1-mrna-20504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 67,137.06 Da | 41.99 | 90.45 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01603 | Protein phosphatase 2A regulatory B subunit (B56 family) | 100 | 511 | 4.9E-190 | IPR002554 |
| SUPERFAMILY | SSF48371 | ARM repeat | 112 | 493 | 7.68E-159 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 107 | 510 | 1.9E-194 | IPR011989 |
| PIRSF | PIRSF028043 | PP2A_B56 | 1 | 549 | 1.9E-243 | IPR002554 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 57 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04113 (Meiosis - yeast)
map04113 (Meiosis - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21650.1 | Protein phosphatase 2A regulatory B subunit family protein. Encodes protein phosphatase 2A (PP2A) B'zeta subunit. Targeted to mitochondria. | 0 |
| RefSeq | XP_021639903.1 | serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Hevea brasiliensis] | 0 |
| Q9LVE2 | Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana OX=3702 GN=B'ZETA PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2KVQ7 | Serine/threonine protein phosphatase 2A regulatory subunit OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology