Basic Information
Locus ID:
nbisL1-mrna-20497
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6515499 | 6515819 | + | nbisL1-mrna-20497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 11,900.75 Da | 41.66 | 100.28 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 103 | 2.61E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 104 | 7.1E-7 | IPR013083 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_016692465.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like [Gossypium hirsutum] | 0 |
| TrEMBL | A0A5D2VHQ7 | RING-type domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D03G008800v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20497 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22731 |