Basic Information
Locus ID:
nbisL1-mrna-20469
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001341F_pilon | 82406 | 90624 | + | nbisL1-mrna-20469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 79,367.17 Da | 55.85 | 64.04 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 137 | 187 | 9.2499E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 285 | 332 | 4.2E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 206 | 268 | 4.8E-15 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 583 | 608 | 5.49E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 218 | 1.88E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 335 | 7.71E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 275 | 5.65E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 215 | 1.0E-16 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 264 | 538 | 4.6E-85 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 580 | 613 | 1.2E-5 | - |
| SMART | SM00647 | ibrneu5 | 272 | 342 | 0.037 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 206 | 268 | 6.5E-24 | IPR002867 |
| SMART | SM00547 | zf_4 | 583 | 607 | 9.9E-6 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 181 | 9.125594 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 581 | 610 | 8.422492 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 133 | 346 | 50.536591 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 585 | 604 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 354 | 374 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021632765.1 | probable E3 ubiquitin-protein ligase ARI8 [Manihot esculenta] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LQL9 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology