Basic Information
Locus ID:
nbisL1-mrna-20461
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000058F_pilon | 3018568 | 3021895 | - | nbisL1-mrna-20461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 47,297.93 Da | 32.84 | 96.07 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 357 | 428 | 1.1E-9 | IPR025110 |
| Pfam | PF00501 | AMP-binding enzyme | 212 | 338 | 4.1E-18 | IPR000873 |
| Pfam | PF00501 | AMP-binding enzyme | 69 | 208 | 4.6E-15 | IPR000873 |
| SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 68 | 435 | 1.44E-62 | - |
| Gene3D | G3DSA:3.40.50.980 | - | 68 | 208 | 1.1E-24 | - |
| Gene3D | G3DSA:3.40.50.980 | - | 209 | 294 | 1.7E-25 | - |
| Gene3D | G3DSA:3.30.300.30 | - | 342 | 435 | 4.0E-20 | - |
| Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 295 | 338 | 1.7E-25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19010.1 | AMP-dependent synthetase and ligase family protein. | 0 |
| RefSeq | XP_015574447.2 | 4-coumarate--CoA ligase-like 6 isoform X1 [Ricinus communis] | 0 |
| Q84P24 | 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana OX=3702 GN=4CLL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2K0V8 | 4-coumarateCoA ligase-like 6 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23598, jg23601, jg39700 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15073 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004411 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g107340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23785, Sbi_jg7617 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12402 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51212, Sgl56512 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021123, gene:ENSEOMG00000024829 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0001480, CQ.Regalona.r1.5BG0001620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30030150 |
| Apiaceae | Apium graveolens | 1 | Ag6G00850 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G003350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708041 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1029.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G06178, Ftri14G09068, Ftri14G21456, Ftri7G01885 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G19010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024787m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g17740.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g017370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0142, Ceq01G0143 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0129, Cgl01G0131 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g05040 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.894 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003819, Pov_00029632 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14294, Lb3G19650 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2759, BH01.3089, CH01.3312 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0118500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012968, gene-QYE76_037589 |
| Poaceae | Oryza coarctata | 3 | Oco16G001940, Oco19G011200, Oco20G011080 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g04770.1, LOC_Os10g42800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G271500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503428, Pt_Chr0503469 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G006410, Chr13G018320, Chr13G018420, Chr13G018550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G340700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG029890, gene_TRIDC1BG035380 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G196700.1, TraesCS1B02G211300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025180_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38192 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15776 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.629, evm.TU.LG17.640 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g00940 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22782 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13326 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20461 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3634 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6832 |
| Salicaceae | Populus euphratica | 1 | populus_peu34108 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635382, gene-LOC132635383 |
| Solanaceae | Solanum chilense | 1 | SOLCI005934200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027934 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16142 |
| Zosteraceae | Zostera marina | 1 | Zosma06g20980.v3.1 |