Basic Information
Locus ID:
nbisL1-mrna-20455
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000058F_pilon | 2966086 | 2972847 | + | nbisL1-mrna-20455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 103,572.45 Da | 43.95 | 86.38 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 748 | 901 | 6.92635E-57 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 318 | 900 | 6.5E-84 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 43 | 140 | 2.2E-23 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 17 | 140 | 1.7E-26 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 315 | 903 | 1.39E-110 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 304 | 515 | 9.7E-66 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 10 | 154 | 3.3E-33 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 155 | 240 | 4.8E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 660 | 910 | 1.9E-57 | - |
| SMART | SM00695 | dusp | 38 | 143 | 4.8E-26 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 19 | 140 | 19.119513 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 317 | 903 | 56.854893 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 845 | 862 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 318 | 333 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10590.1 | ubiquitin-specific protease 10. encodes a member of the ubiquitin-specific protease family, UBP10 | 0 |
| RefSeq | XP_012086627.2 | ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas] | 0 |
| Q93Y01 | Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KY45 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology