Basic Information
Locus ID:
nbisL1-mrna-20439
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 831219 | 841414 | - | nbisL1-mrna-20439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 40,213.43 Da | 43.86 | 106.46 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 289 | 347 | 3.32904E-4 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 191 | 258 | 6.39128E-12 | - |
| Pfam | PF00240 | Ubiquitin family | 285 | 346 | 2.0E-5 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 191 | 260 | 3.3E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 112 | 174 | 4.4E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 188 | 261 | 2.12E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 98 | 176 | 5.99E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 271 | 349 | 4.37E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 261 | 352 | 4.6E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 188 | 260 | 2.4E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 76 | 174 | 3.0E-6 | - |
| SMART | SM00213 | ubq_7 | 103 | 174 | 0.013 | IPR000626 |
| SMART | SM00213 | ubq_7 | 272 | 349 | 1.6 | IPR000626 |
| SMART | SM00213 | ubq_7 | 189 | 260 | 1.3E-8 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 274 | 346 | 11.442183 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 103 | 162 | 10.614717 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 189 | 260 | 17.03846 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 198 | 218 | 1.9E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 219 | 239 | 1.9E-5 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32350.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_021662420.1 | uncharacterized protein LOC110651399 [Hevea brasiliensis] | 0 |
| P0CG70 | Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=ubi PE=3 SV=1 | 0 | |
| TrEMBL | A0A6A6KXL4 | Ubiquitin-like domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_015948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24898 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007967, Ah022537 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21026, Sbi_jg22763 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16636 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018248 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl01855, Sgl01858, Sgl01860, Sgl07007, Sgl07012, Sgl07014 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011855, gene:ENSEOMG00000030547 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G03314 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G16423 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002923m.g.v1.0, Thhalv10017634m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g021550.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11138 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.361 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004435 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG18.55 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1354 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20439, nbisL1-mrna-20461 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8799 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21331 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.320 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17199 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4734 |
| Salicaceae | Populus euphratica | 1 | populus_peu24077 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619510 |
| Solanaceae | Solanum chilense | 1 | SOLCI002204000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024252 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13809 |