Basic Information
Locus ID:
nbisL1-mrna-20438
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 830095 | 830400 | + | nbisL1-mrna-20438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 11,194.37 Da | 37.97 | 99.50 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 77 | 6.96852E-10 | - |
| Pfam | PF00240 | Ubiquitin family | 4 | 78 | 5.1E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 1.73E-12 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 78 | 1.4E-13 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 11.376856 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002527240.1 | uncharacterized protein LOC8270263 [Ricinus communis] | 0 |
| TrEMBL | B9SMM1 | Ubiquitin-like domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0231790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10615 |
| Apiaceae | Apium graveolens | 1 | Ag11G03313 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.994.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32360.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g012060.2N, BniB08g020360.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026741 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1355 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20438, nbisL1-mrna-20462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8800 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21332 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.321 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17198 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4733 |
| Salicaceae | Populus euphratica | 2 | populus_peu22662, populus_peu24076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602560 |
| Solanaceae | Solanum chilense | 2 | SOLCI003907900, SOLCI007324400 |