Basic Information
Locus ID:
nbisL1-mrna-2041
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3727200 | 3737007 | - | nbisL1-mrna-2041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 208,685.67 Da | 48.38 | 75.62 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 387 | 659 | 2.69175E-134 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 1539 | 1802 | 6.03101E-148 | IPR044769 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1578 | 1744 | 1.3E-33 | IPR002498 |
| Pfam | PF01363 | FYVE zinc finger | 33 | 101 | 7.8E-16 | IPR000306 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 408 | 653 | 2.0E-30 | IPR002423 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1535 | 1802 | 2.09E-79 | - |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 453 | 625 | 7.06E-41 | IPR027409 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 31 | 104 | 5.76E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.810.10 | - | 1661 | 1803 | 2.5E-42 | - |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1506 | 1659 | 7.1E-36 | IPR027484 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 452 | 625 | 2.8E-52 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 114 | 1.4E-19 | IPR013083 |
| SMART | SM00064 | fyve_4 | 28 | 103 | 7.9E-19 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1512 | 1803 | 2.8E-126 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 36 | 102 | 13.075357 | IPR017455 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1481 | 1802 | 58.082954 | IPR002498 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1211 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1208 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 712 | - | - |
| Coils | Coil | Coil | 274 | 294 | - | - |
| Coils | Coil | Coil | 1123 | 1143 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_021642012.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M4X8 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology