Basic Information
Locus ID:
nbisL1-mrna-20376
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000058F_pilon | 2557973 | 2564906 | - | nbisL1-mrna-20376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 65,706.37 Da | 40.10 | 80.36 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 478 | 0.0067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 394 | 0.0063 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 92 | 3.47E-9 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 272 | 584 | 3.1E-45 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 91 | 1.1E-11 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 586 | 2.3E-118 | IPR015943 |
| SMART | SM00320 | WD40_4 | 440 | 478 | 6.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 436 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 351 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 394 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 584 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 528 | 34.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 447 | 480 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 361 | 403 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 447 | 480 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 318 | 360 | 9.338814 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 465 | 479 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 338 | 352 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 465 | 479 | 3.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 338 | 352 | 3.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 381 | 395 | 3.2E-6 | IPR020472 |
| Coils | Coil | Coil | 113 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_034894844.1 | protein SPA1-RELATED 2 [Populus alba] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JGB6 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology