Basic Information
Locus ID:
nbisL1-mrna-20369
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Protein ROOT INITIATION DEFECTIVE 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 11274277 | 11275551 | + | nbisL1-mrna-20369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 45,215.99 Da | 38.10 | 93.63 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 162 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 222 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 15 | 319 | 1.41E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 261 | 3.5E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 269 | 388 | 1.9E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 274 | 314 | 0.045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 37 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 166 | 3.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 86 | 124 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 222 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 261 | 490.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 282 | 323 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 282 | 316 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 134 | 164 | 8.737287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 301 | 315 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021660998.1 | protein ROOT INITIATION DEFECTIVE 3-like [Hevea brasiliensis] | 0 |
| Q6ZQA0 | Neurobeachin-like protein 2 OS=Mus musculus OX=10090 GN=Nbeal2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A6KB81 | WD_REPEATS_REGION domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_011133 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag2G00042 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013610 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103720694, gene-LOC103720696, gene-LOC120111278 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2221.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13586 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538730, gene-QOZ80_6BG0491960 |
| Poaceae | Oryza coarctata | 2 | Oco17G007400, Oco18G007630 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G215900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G007920 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10343, nbis-gene-30513 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11100, nbisL1-mrna-11103 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12411, nbisL1-mrna-12412, nbisL1-mrna-9616 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10654 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.34 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013812 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20369 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15323 |
| Salicaceae | Populus euphratica | 1 | populus_peu00751 |