Basic Information
Locus ID:
nbisL1-mrna-20305
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002124F_pilon | 578759 | 580773 | + | nbisL1-mrna-20305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.61 | 15,872.25 Da | 34.45 | 72.06 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 18 | 70 | 1.4E-19 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 41 | 133 | 1.8E-20 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 1 | 93 | 5.5E-12 | IPR001377 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 35 | 46 | - | IPR018282 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 141 | - | - |
| Coils | Coil | Coil | 81 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10360.2 | Ribosomal protein S6e. RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | NP_001190274.1 | Ribosomal protein S6e [Arabidopsis thaliana] | 0 |
| P51430 | Small ribosomal subunit protein eS6y OS=Arabidopsis thaliana OX=3702 GN=RPS6B PE=1 SV=3 | 0 | |
| TrEMBL | A0A7J0EYX5 | Ribosomal protein S6e OS=Actinidia rufa OX=165716 GN=Acr_07g0010340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology