Basic Information
Locus ID:
nbisL1-mrna-20303
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 18070001 | 18075301 | + | nbisL1-mrna-20303 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 111,342.17 Da | 50.59 | 86.62 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 589 | 982 | 2.24381E-112 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 639 | 976 | 1.7E-71 | IPR000569 |
| Pfam | PF00240 | Ubiquitin family | 152 | 223 | 2.2E-17 | IPR000626 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 586 | 970 | 7.59E-92 | IPR035983 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 144 | 225 | 6.91E-17 | IPR029071 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 590 | 857 | 3.1E-57 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 868 | 982 | 5.5E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 143 | 237 | 3.0E-19 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 744 | 826 | 3.1E-57 | - |
| SMART | SM00119 | hect_3 | 608 | 982 | 1.9E-73 | IPR000569 |
| SMART | SM00213 | ubq_7 | 149 | 221 | 5.1E-13 | IPR000626 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 610 | 982 | 66.612335 | IPR000569 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 149 | 225 | 18.149004 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 181 | 201 | 2.4E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 202 | 223 | 2.4E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 160 | 180 | 2.4E-7 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 32 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12570.1 | ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves. | 0 |
| RefSeq | XP_021642039.1 | E3 ubiquitin-protein ligase UPL5-like [Hevea brasiliensis] | 0 |
| Q9SU29 | E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JS97 | E3 ubiquitin-protein ligase UPL5 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21820 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21972 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017350 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g185030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25857, Sbi_jg9706 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18960 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011583 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl41711, Sgl41713, Sgl46509 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010566, gene:ENSEOMG00000035215 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0000800, CQ.Regalona.r1.8BG0000660 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30067160, pistato.v30067550, pistato.v30068530 |
| Apiaceae | Apium graveolens | 9 | Ag11G04978, Ag1G00251, Ag1G00311, Ag1G01185, Ag1G01186 ... |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G007030, COCNU_01G012260, COCNU_01G012270 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713564, gene-LOC103719049 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1263.V1.1, AsparagusV1_05.1264.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G25875 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G12570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027607m.g.v1.0, Thhalv10028412m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04940.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g072810.2N, BniB05g056220.2N, BniB08g037520.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2095 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2294 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0456s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3569, nbisL1-mrna-7735 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1219 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00006039, Pov_00007522, Pov_00016326, Pov_00027453 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00531 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2377, AH08.1998, BH03.2503, BH08.2096, CH03.2701 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0539460, gene-QOZ80_6BG0492820 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0490450.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006082, gene-QYE76_006083, gene-QYE76_029940 |
| Poaceae | Oryza coarctata | 2 | Oco17G007750, Oco18G007990 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g31090.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G222000, gene-BS78_07G141200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501129, Pt_Chr0701610 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G007420, Chr11G011930, Chr16G016810, Chr17G016170 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G421700, Tel7E01G1007900, Tel7E01G430600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG019310, gene_TRIDC5AG040600 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G262600.3, TraesCS5B02G261000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb101780_P001, Zm00001eb316530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17377, nbis-gene-19510 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24326, Zma_g32775 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1964, evm.TU.LG11.383, evm.TU.LG14.1142 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g10080 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1490, evm.TU.Scaffold_8_RagTag.308 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19992, nbisL1-mrna-20303, nbisL1-mrna-9973 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17689, nbisL1-mrna-177 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13430, nbisL1-mrna-17923 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.189 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003440, Maker00011730 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14922 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12175 |
| Salicaceae | Populus euphratica | 3 | populus_peu10575, populus_peu10653, populus_peu26479 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604181, gene-LOC132640239 |
| Solanaceae | Solanum chilense | 8 | SOLCI002230800, SOLCI003330700, SOLCI003548800 ... |
| Solanaceae | Solanum pennellii | 7 | gene-LOC107002406, gene-LOC107003590, gene-LOC107006572 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.10800_chr06_+, gene_452 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0186 |