Basic Information
Locus ID:
nbisL1-mrna-20300
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 18052747 | 18054277 | + | nbisL1-mrna-20300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 30,245.42 Da | 38.58 | 99.31 | -0.12 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021616134.1 | - | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K1ZV00 | F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G010800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1084 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-1815, nbisL1-mrna-19995, nbisL1-mrna-19997 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13427 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011546 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22766 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12172 |