Basic Information
Locus ID:
nbisL1-mrna-20299
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 18047096 | 18048961 | + | nbisL1-mrna-20299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 11,714.21 Da | 46.09 | 97.38 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052310191.1 | F-box protein CPR1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2K1ZV00 | F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G010800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1084 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-1815, nbisL1-mrna-19995, nbisL1-mrna-19997 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13427 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011546 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22766 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12172 |