halophFGD

Basic Information

Locus ID: nbisL1-mrna-20278

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: Belongs to the TUB family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
002124F_pilon	435482	438329	-	nbisL1-mrna-20278

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.24	46,322.80 Da	49.55	76.53	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	61	112	7.6E-10	IPR001810
Pfam	PF01167	Tub family	125	404	1.4E-100	IPR000007
SUPERFAMILY	SSF54518	Tubby C-terminal domain-like	111	409	9.15E-92	IPR025659
SUPERFAMILY	SSF81383	F-box domain	56	106	5.76E-9	IPR036047
Gene3D	G3DSA:3.20.90.10	Tubby Protein; Chain A	120	409	3.8E-89	IPR025659
Gene3D	G3DSA:1.20.1280.50	-	55	108	1.0E-8	-
ProSitePatterns	PS01200	Tub family signature 1.	337	350	-	IPR018066
ProSitePatterns	PS01201	Tub family signature 2.	394	409	-	IPR018066
PRINTS	PR01573	Tubby superfamily signature	319	336	2.8E-70	IPR000007
PRINTS	PR01573	Tubby superfamily signature	182	206	2.8E-70	IPR000007
PRINTS	PR01573	Tubby superfamily signature	366	385	2.8E-70	IPR000007
PRINTS	PR01573	Tubby superfamily signature	387	409	2.8E-70	IPR000007
PRINTS	PR01573	Tubby superfamily signature	166	182	2.8E-70	IPR000007
PRINTS	PR01573	Tubby superfamily signature	337	353	2.8E-70	IPR000007
PRINTS	PR01573	Tubby superfamily signature	230	257	2.8E-70	IPR000007

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G47270.3	-
RefSeq	XP_034919773.1	tubby-like F-box protein 5 [Populus alba]
Swiss-Prot	Q6Z2G9	Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP5 PE=2 SV=1
TrEMBL	A0A4U5QJ27	Tubby-like F-box protein OS=Populus alba OX=43335 GN=D5086_0000087450 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	16	jg11865, jg11995, jg12471, jg16094, jg19135, jg19522, jg8854 ... jg21190, jg22886, jg24275, jg26381, jg27985, jg28438, jg30111, jg35233, jg39741
Aizoaceae	Mesembryanthemum crystallinum	5	gene_16781, gene_4214, gene_6283, gene_7542, gene_968
Amaranthaceae	Atriplex hortensis	4	Ah007733, Ah024432, Ah027468, Ah029743
Amaranthaceae	Beta vulgaris	2	BVRB_1g011510, BVRB_6g128960
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg13260, Sbi_jg19176, Sbi_jg35712, Sbi_jg37590 ... Sbi_jg39051, Sbi_jg51806, Sbi_jg52638, Sbi_jg54338, Sbi_jg868
Amaranthaceae	Salicornia europaea	5	Seu_jg10922, Seu_jg13401, Seu_jg3813, Seu_jg5434, Seu_jg9254
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00006726, GOSA_00013298, GOSA_00021322, GOSA_00021712
Amaranthaceae	Suaeda glauca	10	Sgl15245, Sgl15254, Sgl20396, Sgl23322, Sgl28391, Sgl28431 ... Sgl34515, Sgl39929, Sgl71972, Sgl75534
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000001300, gene:ENSEOMG00000006348 ... gene:ENSEOMG00000011087, gene:ENSEOMG00000013260, gene:ENSEOMG00000027294, gene:ENSEOMG00000029415, gene:ENSEOMG00000035081, gene:ENSEOMG00000035199, gene:ENSEOMG00000042452, gene:ENSEOMG00000043555, gene:ENSEOMG00000048800
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0014600, CQ.Regalona.r1.1BG0011470 ... CQ.Regalona.r1.4AG0017910, CQ.Regalona.r1.4BG0018410, CQ.Regalona.r1.6AG0026890, CQ.Regalona.r1.6BG0028280, CQ.Regalona.r1.7AG0014470, CQ.Regalona.r1.7BG0016420
Anacardiaceae	Pistacia vera	8	pistato.v30009960, pistato.v30037880, pistato.v30046590 ... pistato.v30131520, pistato.v30162580, pistato.v30208030, pistato.v30238460, pistato.v30292390
Apiaceae	Apium graveolens	11	Ag11G03134, Ag1G01939, Ag2G00267, Ag2G02545, Ag3G00440 ... Ag3G01136, Ag4G00456, Ag5G00508, Ag5G02443, Ag7G02125, Ag9G00359
Arecaceae	Cocos nucifera	11	COCNU_01G018980, COCNU_02G002470, COCNU_02G010370 ... COCNU_04G009090, COCNU_06G005600, COCNU_06G006730, COCNU_11G000330, COCNU_14G003760, COCNU_14G003770, COCNU_15G001680, contig69404625G000010
Arecaceae	Phoenix dactylifera	10	gene-LOC103701192, gene-LOC103701213, gene-LOC103703176 ... gene-LOC103703732, gene-LOC103704358, gene-LOC103706886, gene-LOC103709468, gene-LOC103710098, gene-LOC103722062, gene-LOC103723230
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.1575.V1.1, AsparagusV1_01.2703.V1.1 ... AsparagusV1_04.389.V1.1, AsparagusV1_05.110.V1.1, AsparagusV1_05.1861.V1.1, AsparagusV1_07.1498.V1.1, AsparagusV1_09.161.V1.1
Asteraceae	Flaveria trinervia	12	Ftri10G12976, Ftri12G03156, Ftri13G08643, Ftri14G22746 ... Ftri15G30411, Ftri16G02832, Ftri2G02009, Ftri3G24404, Ftri4G05852, Ftri6G13419, Ftri8G26584, Ftri9G25057
Brassicaceae	Arabidopsis thaliana	9	AT1G25280.1, AT1G43640.1, AT1G47270.1, AT1G53320.1 ... AT1G76900.1, AT2G18280.1, AT2G47900.3, AT3G06380.1, AT5G18680.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10001474m.g.v1.0, Thhalv10007625m.g.v1.0 ... Thhalv10011537m.g.v1.0, Thhalv10011566m.g.v1.0, Thhalv10013783m.g.v1.0, Thhalv10018551m.g.v1.0, Thhalv10020909m.g.v1.0, Thhalv10022721m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g22960.v2.2, Sp1g32580.v2.2, Sp1g34400.v2.2 ... Sp1g39900.v2.2, Sp3g05290.v2.2, Sp3g31690.v2.2, Sp4g29820.v2.2, Sp5g32020.v2.2, Sp6g25660.v2.2
Brassicaceae	Brassica nigra	13	BniB01g000110.2N, BniB01g057300.2N, BniB02g044050.2N ... BniB03g018200.2N, BniB03g032150.2N, BniB03g055950.2N, BniB03g066940.2N, BniB04g041030.2N, BniB04g063680.2N, BniB05g073330.2N, BniB06g027460.2N, BniB07g002540.2N, BniB07g009420.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq01G0942, Ceq03G1584, Ceq03G1973, Ceq05G0414, Ceq06G1614 ... Ceq09G0767, Ceq09G1216
Casuarinaceae	Casuarina glauca	7	Cgl01G1060, Cgl03G1710, Cgl03G2120, Cgl05G0435, Cgl06G1675 ... Cgl09G0827, Cgl09G1307
Cymodoceaceae	Cymodocea nodosa	8	gene.Cymno01g10860, gene.Cymno02g16320, gene.Cymno03g13240 ... gene.Cymno04g00550, gene.Cymno06g04440, gene.Cymno08g08010, gene.Cymno11g00160, gene.Cymno18g02180
Dunaliellaceae	Dunaliella salina	2	Dusal.0131s00007.v1.0, Dusal.0771s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	10	gene.Thate01g25050, gene.Thate02g20290, gene.Thate02g22970 ... gene.Thate02g35930, gene.Thate03g02350, gene.Thate05g08440, gene.Thate07g03580, gene.Thate08g05530, gene.Thate08g10050, gene.Thate09g01800
Malvaceae	Hibiscus hamabo Siebold & Zucc.	7	nbisL1-mrna-1108, nbisL1-mrna-12133, nbisL1-mrna-1709 ... nbisL1-mrna-1775, nbisL1-mrna-4405, nbisL1-mrna-9262, nbisL1-mrna-9974
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG04.272, evm.TU.LG05.1442, evm.TU.LG06.206 ... evm.TU.LG06.590, evm.TU.LG08.1109, evm.TU.LG11.1364
Plantaginaceae	Plantago ovata	8	Pov_00002051, Pov_00008205, Pov_00009360, Pov_00009364 ... Pov_00023020, Pov_00026200, Pov_00028163, Pov_00039877
Plumbaginaceae	Limonium bicolor	10	Lb1G06255, Lb2G08801, Lb2G08809, Lb4G23655, Lb4G23671 ... Lb7G33263, Lb7G33283, Lb7G34399, Lb7G34407, Lb7G34781
Poaceae	Echinochloa crus-galli	36	AH01.3635, AH02.2718, AH02.3327, AH02.3993, AH03.3989 ... AH04.371, AH05.1420, AH05.1495, AH05.1752, AH05.2296, AH05.273, AH07.3147, AH08.26, AH09.2796, BH01.1421, BH01.3980, BH02.2799, BH02.4012, BH03.4315, BH04.368, BH05.1590, BH05.1930, BH05.2402, BH05.317, BH07.2978, BH09.3029, CH01.4252, CH02.3740, CH02.4041, CH04.371, CH05.1792, CH05.1995, CH05.2492, CH07.198, CH08.26, CH09.3195
Poaceae	Eleusine coracana subsp. coracana	24	gene-QOZ80_1AG0028320, gene-QOZ80_1AG0041090 ... gene-QOZ80_1BG0078500, gene-QOZ80_1BG0091130, gene-QOZ80_2AG0142500, gene-QOZ80_2BG0197970, gene-QOZ80_3AG0248250, gene-QOZ80_3BG0280010, gene-QOZ80_4AG0298520, gene-QOZ80_4BG0329210, gene-QOZ80_5AG0363410, gene-QOZ80_5AG0366840, gene-QOZ80_5AG0371790, gene-QOZ80_5AG0382530, gene-QOZ80_5BG0411500, gene-QOZ80_5BG0414480, gene-QOZ80_5BG0419220, gene-QOZ80_5BG0429420, gene-QOZ80_7AG0580640, gene-QOZ80_7BG0611810, gene-QOZ80_8AG0614340, gene-QOZ80_8BG0641850, gene-QOZ80_9AG0675830, gene-QOZ80_9BG0699650
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.1HG0075890.1, HORVU.MOREX.r3.1HG0077640.1 ... HORVU.MOREX.r3.2HG0115240.1, HORVU.MOREX.r3.2HG0215220.1, HORVU.MOREX.r3.3HG0279470.1, HORVU.MOREX.r3.3HG0299740.1, HORVU.MOREX.r3.4HG0349530.1, HORVU.MOREX.r3.4HG0377080.1, HORVU.MOREX.r3.5HG0457960.1, HORVU.MOREX.r3.6HG0607550.1, HORVU.MOREX.r3.7HG0707250.1
Poaceae	Lolium multiflorum	15	gene-QYE76_002826, gene-QYE76_002969, gene-QYE76_014560 ... gene-QYE76_015807, gene-QYE76_024642, gene-QYE76_033659, gene-QYE76_037216, gene-QYE76_037231, gene-QYE76_037573, gene-QYE76_038971, gene-QYE76_047334, gene-QYE76_054539, gene-QYE76_056763, gene-QYE76_064762, gene-QYE76_067837
Poaceae	Oryza coarctata	23	Oco01G017060, Oco01G025830, Oco02G017280, Oco02G026760 ... Oco03G019300, Oco04G020090, Oco05G013540, Oco06G012860, Oco07G019890, Oco08G019230, Oco09G010640, Oco09G014120, Oco09G016650, Oco10G010650, Oco10G014140, Oco13G015160, Oco14G015990, Oco15G000180, Oco16G000220, Oco21G001860, Oco22G002670, Oco23G002390, Oco24G001910
Poaceae	Oryza sativa	13	LOC_Os01g48370.1, LOC_Os01g55430.2, LOC_Os01g64700.2 ... LOC_Os02g47640.1, LOC_Os03g22800.1, LOC_Os04g59130.1, LOC_Os05g36190.1, LOC_Os05g43850.1, LOC_Os05g48670.1, LOC_Os07g47110.1, LOC_Os08g01290.5, LOC_Os11g06420.1, LOC_Os12g06630.2
Poaceae	Paspalum vaginatum	11	gene-BS78_01G354600, gene-BS78_02G382100 ... gene-BS78_03G228300, gene-BS78_03G282600, gene-BS78_03G348500, gene-BS78_04G247700, gene-BS78_06G293200, gene-BS78_07G004000, gene-BS78_08G035100, gene-BS78_09G158100, gene-BS78_09G201000
Poaceae	Puccinellia tenuiflora	14	Pt_Chr0102729, Pt_Chr0104267, Pt_Chr0203928, Pt_Chr0504185 ... Pt_Chr0504197, Pt_Chr0504888, Pt_Chr0504906, Pt_Chr0601302, Pt_Chr0601327, Pt_Chr0602314, Pt_Chr0602325, Pt_Chr0700122, Pt_Chr0703053, Pt_Chr0703285
Poaceae	Sporobolus alterniflorus	31	Chr01G017030, Chr01G019740, Chr02G003730, Chr02G012930 ... Chr03G013330, Chr03G020970, Chr04G011380, Chr04G022730, Chr05G020760, Chr06G004110, Chr06G024500, Chr07G010780, Chr08G013510, Chr08G021340, Chr09G022280, Chr0G021110, Chr12G018320, Chr15G005520, Chr16G009970, Chr17G009020, Chr18G010350, Chr18G013820, Chr19G000680, Chr20G013780, Chr22G003810, Chr22G007280, Chr23G000310, Chr24G013020, Chr26G018890, Chr27G016800, Chr29G013140
Poaceae	Thinopyrum elongatum	11	Tel1E01G446000, Tel1E01G570100, Tel2E01G1007200 ... Tel2E01G255600, Tel3E01G453400, Tel3E01G600100, Tel4E01G179500, Tel4E01G282200, Tel5E01G227000, Tel6E01G500100, Tel7E01G559100
Poaceae	Triticum dicoccoides	22	gene_TRIDC1AG040680, gene_TRIDC1AG049580 ... gene_TRIDC1BG046290, gene_TRIDC1BG056320, gene_TRIDC2AG014710, gene_TRIDC2AG080350, gene_TRIDC2BG017750, gene_TRIDC2BG088700, gene_TRIDC3AG040310, gene_TRIDC3AG054260, gene_TRIDC3BG045450, gene_TRIDC3BG060920, gene_TRIDC4AG020270, gene_TRIDC4AG033190, gene_TRIDC4BG017410, gene_TRIDC4BG030200, gene_TRIDC5AG021130, gene_TRIDC5BG021810, gene_TRIDC6AG041810, gene_TRIDC6BG048820, gene_TRIDC7AG045710, gene_TRIDC7BG037640
Poaceae	Triticum aestivum	33	TraesCS1A02G273100.1, TraesCS1A02G333900.1 ... TraesCS1B02G282900.1, TraesCS1B02G347200.1, TraesCS1D02G273200.1, TraesCS1D02G336400.1, TraesCS2A02G120900.1, TraesCS2A02G574000.1, TraesCS2B02G141800.1, TraesCS2B02G613800.1, TraesCS2D02G122900.1, TraesCS2D02G584900.1, TraesCS3A02G270800.1, TraesCS3A02G378300.1, TraesCS3B02G304600.1, TraesCS3B02G411000.1, TraesCS3D02G270500.1, TraesCS3D02G371600.1, TraesCS4A02G140800.1, TraesCS4A02G209000.1, TraesCS4B02G112600.1, TraesCS4B02G166400.1, TraesCS4D02G110100.1, TraesCS4D02G164200.1, TraesCS5A02G124100.1, TraesCS5B02G123800.1, TraesCS5D02G132000.1, TraesCS6A02G272800.1, TraesCS6B02G300200.1, TraesCS6D02G252800.1, TraesCS7A02G326400.1, TraesCS7B02G227000.1, TraesCS7D02G323100.1
Poaceae	Zea mays	12	Zm00001eb016930_P001, Zm00001eb076160_P001 ... Zm00001eb146720_P001, Zm00001eb157040_P004, Zm00001eb188370_P001, Zm00001eb198820_P002, Zm00001eb202420_P002, Zm00001eb252060_P001, Zm00001eb289070_P001, Zm00001eb292770_P002, Zm00001eb360160_P001, Zm00001eb407680_P004
Poaceae	Zoysia japonica	14	nbis-gene-11267, nbis-gene-14036, nbis-gene-14437 ... nbis-gene-1576, nbis-gene-22111, nbis-gene-24015, nbis-gene-25180, nbis-gene-26061, nbis-gene-28633, nbis-gene-46319, nbis-gene-51680, nbis-gene-53970, nbis-gene-6260, nbis-gene-8989
Poaceae	Zoysia macrostachya	17	Zma_g10857, Zma_g11620, Zma_g1208, Zma_g14231, Zma_g16978 ... Zma_g17606, Zma_g18451, Zma_g22284, Zma_g25524, Zma_g26861, Zma_g27128, Zma_g28318, Zma_g28577, Zma_g5738, Zma_g7029, Zma_g8417, Zma_g9080
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.1120, evm.TU.LG01.175, evm.TU.LG02.794 ... evm.TU.LG03.1577, evm.TU.LG03.2007, evm.TU.LG04.1350, evm.TU.LG04.577, evm.TU.LG05.1876, evm.TU.LG05.31, evm.TU.LG09.1965, evm.TU.LG12.253, evm.TU.LG14.307, evm.TU.LG14.462, evm.TU.LG25.1300
Posidoniaceae	Posidonia oceanica	7	gene.Posoc01g01340, gene.Posoc02g32360, gene.Posoc03g17890 ... gene.Posoc04g00520, gene.Posoc05g20690, gene.Posoc07g08360, gene.Posoc08g10040
Rhizophoraceae	Bruguiera sexangula	10	evm.TU.Scaffold_3_RagTag.224, evm.TU.Scaffold_5_RagTag.912 ... evm.TU.Scaffold_6_RagTag.2025, evm.TU.Scaffold_6_RagTag.642, evm.TU.Scaffold_7_RagTag.1229, evm.TU.Scaffold_8_RagTag.1104, evm.TU.Scaffold_8_RagTag.531, evm.TU.Scaffold_8_RagTag.532, evm.TU.Scaffold_9_RagTag.127, evm.TU.Scaffold_9_RagTag.850
Rhizophoraceae	Carallia pectinifolia	11	nbisL1-mrna-11434, nbisL1-mrna-16045, nbisL1-mrna-17103 ... nbisL1-mrna-18601, nbisL1-mrna-21368, nbisL1-mrna-22066, nbisL1-mrna-399, nbisL1-mrna-473, nbisL1-mrna-9028, nbisL1-mrna-9728, nbisL1-mrna-9734
Rhizophoraceae	Ceriops tagal	10	nbisL1-mrna-1075, nbisL1-mrna-12372, nbisL1-mrna-13908 ... nbisL1-mrna-16202, nbisL1-mrna-17583, nbisL1-mrna-19159, nbisL1-mrna-19329, nbisL1-mrna-21090, nbisL1-mrna-2206, nbisL1-mrna-7736
Rhizophoraceae	Ceriops zippeliana	10	nbisL1-mrna-11531, nbisL1-mrna-11779, nbisL1-mrna-13204 ... nbisL1-mrna-15452, nbisL1-mrna-18107, nbisL1-mrna-18108, nbisL1-mrna-18451, nbisL1-mrna-534, nbisL1-mrna-5966, nbisL1-mrna-7580
Rhizophoraceae	Kandelia candel	9	evm.TU.utg000002l.358, evm.TU.utg000003l.560 ... evm.TU.utg000003l.81, evm.TU.utg000006l.253, evm.TU.utg000011l.1231, evm.TU.utg000011l.381, evm.TU.utg000018l.369, evm.TU.utg000018l.657, evm.TU.utg000019l.1102
Rhizophoraceae	Kandelia obovata	9	Maker00003062, Maker00003442, Maker00007140, Maker00008138 ... Maker00009404, Maker00011966, Maker00012497, Maker00013571, Maker00017702
Rhizophoraceae	Rhizophora apiculata	11	nbisL1-mrna-10045, nbisL1-mrna-13695, nbisL1-mrna-14013 ... nbisL1-mrna-1543, nbisL1-mrna-15604, nbisL1-mrna-3014, nbisL1-mrna-6505, nbisL1-mrna-6707, nbisL1-mrna-8944, nbisL1-mrna-9632, nbisL1-mrna-9633
Rhizophoraceae	Rhizophora mangle	9	nbisL1-mrna-18433, nbisL1-mrna-18644, nbisL1-mrna-18646 ... nbisL1-mrna-20278, nbisL1-mrna-2349, nbisL1-mrna-3074, nbisL1-mrna-3597, nbisL1-mrna-5201, nbisL1-mrna-7527
Salicaceae	Populus euphratica	11	populus_peu00605, populus_peu07796, populus_peu14210 ... populus_peu14882, populus_peu15231, populus_peu17667, populus_peu22003, populus_peu32561, populus_peu32894, populus_peu38280, populus_peu38334
Solanaceae	Lycium barbarum	9	gene-LOC132598745, gene-LOC132606376, gene-LOC132609232 ... gene-LOC132616842, gene-LOC132618649, gene-LOC132622246, gene-LOC132623286, gene-LOC132626855, gene-LOC132627325
Solanaceae	Solanum chilense	9	SOLCI000671700, SOLCI001109300, SOLCI001336100 ... SOLCI003048000, SOLCI003942300, SOLCI004077600, SOLCI004754700, SOLCI005541100, SOLCI006982300
Solanaceae	Solanum pennellii	10	gene-LOC107002636, gene-LOC107007974, gene-LOC107008035 ... gene-LOC107008873, gene-LOC107009191, gene-LOC107015146, gene-LOC107018237, gene-LOC107018277, gene-LOC107026362, gene-LOC107031484
Tamaricaceae	Reaumuria soongarica	8	STRG.16380_chr06_+, STRG.27018_chr04_+, STRG.3378_chr01_- ... STRG.3656_chr02_+, STRG.811_chr01_-, STRG.8450_chr06_-, gene_1014, gene_9401
Tamaricaceae	Tamarix chinensis	7	TC01G0243, TC02G2763, TC03G2878, TC04G2189, TC09G0243 ... TC09G1908, TC12G1561
Zosteraceae	Zostera marina	6	Zosma01g18330.v3.1, Zosma02g05100.v3.1, Zosma04g20550.v3.1 ... Zosma06g00130.v3.1, Zosma06g25390.v3.1, Zosma06g25410.v3.1