Basic Information
Locus ID:
nbisL1-mrna-20272
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000058F_pilon | 1843127 | 1849669 | - | nbisL1-mrna-20272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 24,284.72 Da | 55.91 | 77.89 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 71 | 5.81407E-43 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 3.6E-27 | IPR002100 |
| Pfam | PF01486 | K-box region | 91 | 171 | 4.3E-24 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 73 | 9.29E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 95 | 1.2E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.2E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 179 | 13.387495 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.048094 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 4.1E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 4.1E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 4.1E-30 | IPR002100 |
| Coils | Coil | Coil | 143 | 170 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_048229458.1 | agamous-like MADS-box protein AGL19 [Ricinus communis] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067K164 | MADS-box protein SOC1-like OS=Jatropha curcas OX=180498 GN=JCGZ_20695 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology