Basic Information
Locus ID:
nbisL1-mrna-2025
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3912480 | 3917643 | - | nbisL1-mrna-2025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 44,734.57 Da | 44.20 | 69.83 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 45 | 115 | 3.1432E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 129 | 203 | 3.18073E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 249 | 323 | 3.71385E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 251 | 317 | 1.3E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 45 | 111 | 1.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 130 | 200 | 5.0E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 237 | 327 | 2.58E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 31 | 121 | 1.88E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 121 | 216 | 6.04E-29 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 126 | 227 | 2.7E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 125 | 4.4E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 228 | 328 | 2.8E-22 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 129 | 202 | 0.0024 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 250 | 319 | 1.6E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 129 | 202 | 9.2E-26 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 44 | 113 | 2.9E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 128 | 206 | 17.762232 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 249 | 323 | 15.050424 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 43 | 117 | 14.965146 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_012077083.1 | oligouridylate-binding protein 1 [Jatropha curcas] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067KCI8 | Oligouridylate-binding protein 1-like OS=Jatropha curcas OX=180498 GN=JCGZ_07512 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology