Basic Information
Locus ID:
nbisL1-mrna-2019
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 19487084 | 19491198 | - | nbisL1-mrna-2019 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 122,425.56 Da | 34.10 | 98.24 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 863 | 1131 | 4.79082E-90 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 39 | 78 | 1.2E-10 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 310 | 332 | 0.53 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 860 | 1057 | 2.2E-43 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 262 | 284 | 0.0069 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 643 | 702 | 1.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 169 | 227 | 2.9E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 839 | 1128 | 1.75E-74 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 134 | 474 | 7.85E-56 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 574 | 753 | 1.36E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 240 | 343 | 8.3E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 349 | 485 | 1.3E-21 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 820 | 932 | 5.7E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 38 | 239 | 5.3E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 516 | 766 | 1.2E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 933 | 1133 | 2.6E-56 | - |
| SMART | SM00369 | LRR_typ_2 | 166 | 189 | 4.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 665 | 689 | 8.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 165 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 617 | 640 | 96.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 857 | 1135 | 1.3E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 190 | 214 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 308 | 332 | 4.6 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 857 | 1131 | 39.396416 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 977 | 989 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 863 | 885 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 665 | 678 | 6.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 311 | 324 | 6.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.1 | receptor-like protein kinase 2. | 0 |
| RefSeq | XP_002323902.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Populus trichocarpa] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M9E7 | Uncharacterized protein MANES_01G096300 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology