Basic Information
Locus ID:
nbisL1-mrna-20140
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000058F_pilon | 719629 | 753451 | - | nbisL1-mrna-20140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 287,096.88 Da | 41.22 | 89.98 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 2.5E-30 | IPR026854 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2059 | 2120 | 7.6E-7 | IPR010482 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 116 | 292 | 3.0E-39 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1601 | 1691 | 5.8E-6 | IPR009291 |
| SMART | SM00694 | dysfc | 2088 | 2125 | 0.0018 | IPR006614 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021649531.1 | uncharacterized protein LOC110641940 isoform X2 [Hevea brasiliensis] | 0 |
| Q555C6 | Intermembrane lipid transfer protein vps13B OS=Dictyostelium discoideum OX=44689 GN=vps13B PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2MGV9 | PH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology