Basic Information
Locus ID:
nbisL1-mrna-2008
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 19372041 | 19374294 | + | nbisL1-mrna-2008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 34,897.34 Da | 32.15 | 85.44 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 1 | 245 | 1.1E-31 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 246 | 7.86E-57 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 30 | 1.9E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 31 | 277 | 2.9E-60 | - |
| SMART | SM00220 | serkin_6 | 1 | 250 | 6.5E-10 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 250 | 28.83832 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 74 | 86 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_021670698.1 | receptor-like protein kinase FERONIA [Hevea brasiliensis] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | B9T7W0 | Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis OX=3988 GN=RCOM_0087290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 7 | nbisL1-mrna-15250, nbisL1-mrna-15253, nbisL1-mrna-15254 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12685 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.97 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18379, nbisL1-mrna-21419 |