Basic Information
Locus ID:
nbisL1-mrna-20074
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000296F_pilon | 2922796 | 2924117 | + | nbisL1-mrna-20074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 45,485.41 Da | 43.17 | 98.00 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 76 | 1.16586E-21 | - |
| Pfam | PF04564 | U-box domain | 31 | 99 | 5.4E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 104 | 2.61E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 143 | 386 | 6.4E-12 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 125 | 396 | 8.1E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 102 | 8.0E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 34 | 96 | 1.2E-23 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 103 | 22.036406 | IPR003613 |
| Coils | Coil | Coil | 369 | 389 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021637370.1 | U-box domain-containing protein 21-like [Hevea brasiliensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6MS09 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_042023 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology