Basic Information
Locus ID:
nbisL1-mrna-20073
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 16075506 | 16082446 | + | nbisL1-mrna-20073 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 74,563.72 Da | 46.31 | 85.06 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 95 | 310 | 1.6E-51 | IPR008811 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 318 | 504 | 8.3E-70 | IPR008811 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 529 | 654 | 6.3E-46 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 278 | 568 | 8.89E-28 | IPR017853 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57520.2 | seed imbibition 2. | 0 |
| RefSeq | XP_034898254.1 | - | 0 |
| Q94A08 | Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A836EDH5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology