Basic Information
Locus ID:
nbisL1-mrna-20045
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000296F_pilon | 2566815 | 2570501 | - | nbisL1-mrna-20045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 52,134.01 Da | 31.78 | 67.93 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 280 | 316 | 1.23E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 278 | 316 | 2.3E-13 | - |
| SMART | SM00547 | zf_4 | 288 | 312 | 1.1E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 286 | 315 | 9.348453 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 290 | 309 | - | IPR001876 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_024465184.2 | uncharacterized protein LOC7462679 isoform X3 [Populus trichocarpa] | 0 |
| TrEMBL | A0A3N7FNU3 | Zinc finger protein VAR3, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR_010G107400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology