Basic Information
Locus ID:
nbisL1-mrna-20040
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000296F_pilon | 2523902 | 2528869 | - | nbisL1-mrna-20040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 53,323.93 Da | 40.96 | 95.84 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 23 | 342 | 2.1E-78 | IPR000490 |
| Pfam | PF07983 | X8 domain | 360 | 431 | 2.5E-18 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 23 | 342 | 8.73E-84 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 22 | 348 | 3.5E-113 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 353 | 453 | 9.4E-10 | - |
| SMART | SM00768 | X8_cls | 359 | 444 | 3.1E-49 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 257 | 270 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_021687766.1 | glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Hevea brasiliensis] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067L1X7 | glucan endo-1,3-beta-D-glucosidase OS=Jatropha curcas OX=180498 GN=JCGZ_04742 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology