Basic Information
Locus ID:
nbisL1-mrna-2002
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 6653737 | 6658264 | + | nbisL1-mrna-2002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 53,832.90 Da | 53.67 | 82.62 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 439 | 0.017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 171 | 481 | 1.95E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 355 | 485 | 1.8E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 116 | 354 | 2.1E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 306 | 346 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 439 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 299 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 483 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 0.59 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 199 | 8.737287 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 129 | - | - |
| Coils | Coil | Coil | 5 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50970.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021615782.1 | uncharacterized protein LOC110617357 isoform X1 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2K0U6 | WD_REPEATS_REGION domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18379 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13943 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001525 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30848, Sbi_jg58417 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28294 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004870 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54954, Sgl60213 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007564, gene:ENSEOMG00000023546 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018080, CQ.Regalona.r1.5BG0019230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012590 |
| Apiaceae | Apium graveolens | 3 | Ag4G00025, Ag4G00051, Ag9G01226 |
| Arecaceae | Cocos nucifera | 2 | contig69058962G000010, scaffold030607G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715359 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1628.V1.1, AsparagusV1_10.386.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G02735 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G19920.1, AT5G50970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013007m.g.v1.0, Thhalv10013209m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g13140.v2.2, Sp6g24460.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042800.2N, BniB05g043450.2N, BniB08g018260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1936 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2101 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g00020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11840 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.556 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24229, Lb4G25721, Lb5G27028 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.597, BH01.129, CH09.3330 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0253150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0535010.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G029050, Oco06G030070 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G008900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106584, Pt_Chr0106609 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G000350, Chr12G031770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G861400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG049630, gene_TRIDC5BG081340 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G328700.2, TraesCS5B02G542700.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb064630_P001, Zm00001eb210690_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16760 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2357, Zma_g45 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2733, evm.TU.LG02.157, evm.TU.LG09.1395 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g00030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.303 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29055 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6907 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2002 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000403 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14717 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1305 |
| Salicaceae | Populus euphratica | 4 | populus_peu28958, populus_peu28959, populus_peu30366 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603604, gene-LOC132633158 |
| Solanaceae | Solanum chilense | 1 | SOLCI005895300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005175, gene-LOC107013032 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16051 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0758 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07820.v3.1 |