Basic Information
Locus ID:
nbisL1-mrna-2002
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 19306890 | 19309841 | + | nbisL1-mrna-2002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 100,267.76 Da | 42.57 | 83.66 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 547 | 812 | 1.4808E-95 | - |
| Pfam | PF12819 | Malectin-like domain | 41 | 417 | 2.5E-32 | IPR024788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 546 | 811 | 6.4E-49 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 526 | 809 | 1.48E-78 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 38 | 207 | 2.3E-17 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 507 | 617 | 5.8E-35 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 235 | 419 | 3.1E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 618 | 840 | 2.0E-62 | - |
| SMART | SM00220 | serkin_6 | 541 | 814 | 8.9E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 541 | 814 | 37.728607 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 547 | 570 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 662 | 674 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 448 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_021670698.1 | receptor-like protein kinase FERONIA [Hevea brasiliensis] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9WBL3 | Protein kinase domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_02G057000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 7 | nbisL1-mrna-15250, nbisL1-mrna-15253, nbisL1-mrna-15254 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12685 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.97 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18379, nbisL1-mrna-21419 |