Basic Information
Locus ID:
nbisL1-mrna-20003
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 11775697 | 11776713 | + | nbisL1-mrna-20003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 38,350.69 Da | 60.76 | 68.99 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 226 | 267 | 1.0872E-23 | - |
| Pfam | PF13639 | Ring finger domain | 225 | 267 | 4.8E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 20 | 53 | 8.3E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 271 | 4.95E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 272 | 8.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 226 | 266 | 5.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 226 | 267 | 12.312242 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021604703.1 | E3 ubiquitin-protein ligase RZF1 isoform X1 [Manihot esculenta] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6KQX3 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_023758 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology