Basic Information
Locus ID:
nbisL1-mrna-20001
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000296F_pilon | 1857764 | 1873202 | + | nbisL1-mrna-20001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 68,376.46 Da | 53.25 | 57.02 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 438 | 522 | 1.9E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 539 | 570 | 1.3E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 438 | 523 | 3.1E-31 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 285 | - | - |
| Coils | Coil | Coil | 476 | 496 | - | - |
| Coils | Coil | Coil | 427 | 464 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.2 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_034912842.1 | uncharacterized protein LOC118047615 isoform X1 [Populus alba] | 0 |
| TrEMBL | A0A2P2IPX7 | PAPA-1 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology