Basic Information
Locus ID:
nbisL1-mrna-19994
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000296F_pilon | 1630106 | 1635360 | - | nbisL1-mrna-19994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 46,359.96 Da | 40.00 | 96.02 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 250 | 380 | 2.91343E-63 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 39 | 239 | 5.55502E-117 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 62 | 224 | 2.2E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 263 | 371 | 5.8E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 105 | 393 | 1.76E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 28 | 245 | 8.5E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 246 | 410 | 2.8E-60 | IPR027417 |
| SMART | SM00490 | helicmild6 | 290 | 371 | 2.6E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 56 | 253 | 4.1E-55 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | 27.353027 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 410 | 26.801525 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 37 | 65 | 10.081251 | IPR014014 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_012065797.1 | eukaryotic initiation factor 4A-3 [Jatropha curcas] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M619 | DEAD-box ATP-dependent RNA helicase 2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology