Basic Information
Locus ID:
nbisL1-mrna-19900
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001814F_pilon | 1016050 | 1022922 | + | nbisL1-mrna-19900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 85,115.50 Da | 48.00 | 72.89 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 502 | 779 | 9.93463E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 663 | 696 | 0.0085 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 744 | 779 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 541 | 572 | 8.1E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.0E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 503 | 530 | 5.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 498 | 779 | 8.7E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 474 | 631 | 3.5E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 632 | 779 | 6.3E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 658 | 696 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 530 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 619 | 655 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 572 | 7.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 740 | 779 | 9.3E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 540 | 581 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 747 | 779 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 498 | 539 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 498 | 533 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 747 | 779 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 540 | 575 | 11.154684 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 517 | 531 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 559 | 573 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 517 | 531 | 2.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 766 | 779 | 2.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 559 | 573 | 2.7E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 405 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021633058.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Manihot esculenta] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UNV0 | LisH domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G045500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology