Basic Information
Locus ID:
nbisL1-mrna-19855
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001814F_pilon | 720131 | 726999 | - | nbisL1-mrna-19855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 166,774.08 Da | 39.88 | 108.62 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 327 | 614 | 3.87959E-103 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 640 | 805 | 4.18768E-78 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 931 | 1225 | 6.46765E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1248 | 1468 | 1.44958E-125 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 933 | 1175 | 1.4E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1267 | 1415 | 8.7E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 329 | 594 | 3.8E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 670 | 758 | 1.7E-9 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 930 | 1230 | 3.79E-51 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 314 | 622 | 2.62E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1242 | 1480 | 3.65E-68 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 639 | 828 | 3.45E-40 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 296 | 623 | 7.6E-55 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 892 | 1230 | 4.2E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1235 | 1486 | 3.4E-81 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 646 | 845 | 2.2E-54 | IPR027417 |
| SMART | SM00382 | AAA_5 | 631 | 814 | 1.9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1276 | 1461 | 2.2E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 329 | 606 | 36.130405 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 595 | 829 | 17.6672 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1250 | 1484 | 17.473789 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 933 | 1203 | 36.151318 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 731 | 745 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 905 | - | - |
| Coils | Coil | Coil | 888 | 908 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021630976.2 | ABC transporter C family member 5 [Manihot esculenta] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2KA88 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology