Basic Information
Locus ID:
nbisL1-mrna-19847
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 14189970 | 14196259 | + | nbisL1-mrna-19847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 31,081.23 Da | 65.90 | 97.47 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 86 | 134 | 2.39205E-17 | - |
| Pfam | PF12906 | RING-variant domain | 86 | 133 | 2.7E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 137 | 2.12E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 138 | 2.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 85 | 134 | 6.1E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 78 | 140 | 19.622206 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021616198.1 | E3 ubiquitin-protein ligase MARCHF1 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2KMN9 | Membrane associated ring finger 1 8 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology