Basic Information
Locus ID:
nbisL1-mrna-19782
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 13555279 | 13571978 | + | nbisL1-mrna-19782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 63,853.18 Da | 41.81 | 84.26 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07983 | X8 domain | 500 | 571 | 2.6E-19 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 165 | 486 | 6.6E-77 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 165 | 485 | 5.15E-81 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 164 | 491 | 1.2E-110 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 495 | 582 | 4.8E-10 | - |
| SMART | SM00768 | X8_cls | 499 | 580 | 1.3E-36 | IPR012946 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_048235032.1 | glucan endo-1,3-beta-glucosidase 4-like [Ricinus communis] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IV04 | glucan endo-1,3-beta-D-glucosidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology