Basic Information
Locus ID:
nbisL1-mrna-1978
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 3085074 | 3092115 | + | nbisL1-mrna-1978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 40,611.56 Da | 37.92 | 74.36 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 10 | 143 | 3.3E-12 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 178 | 4.92E-36 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 92 | 1.0E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 93 | 155 | 3.3E-15 | - |
| SMART | SM00220 | serkin_6 | 9 | 239 | 5.5E-7 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 9 | 367 | 15.736102 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 131 | 143 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 15 | 45 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 345 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14340.1 | casein kinase I. Phosphorylates serine or threonine residues that are near and C-terminal to acidic side chains on a variety of target proteins | 0 |
| RefSeq | XP_021594990.1 | casein kinase 1-like protein 10 [Manihot esculenta] | 0 |
| Q39050 | Casein kinase 1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=CKL11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M911 | Uncharacterized protein MANES_15G042000 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah006375 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010269 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0011600 |
| Apiaceae | Apium graveolens | 6 | Ag10G00887, Ag4G00179, Ag5G00920, Ag5G01818, Ag6G02731 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.84.V1.1, AsparagusV1_Unassigned.1111.V1.1 |
| Brassicaceae | Brassica nigra | 1 | BniB03g068750.2N |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02064 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.3984 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005496, gene-QYE76_008607 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G025590 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G305200, Tel6E01G260700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG018550 |
| Poaceae | Zea mays | 7 | Zm00001eb046190_P001, Zm00001eb096600_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29461, nbis-gene-39846 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8091 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4613 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1978 |
| Salicaceae | Populus euphratica | 1 | populus_peu22068 |