Basic Information
Locus ID:
nbisL1-mrna-1977
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
leucine-rich repeat receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 19064026 | 19067176 | + | nbisL1-mrna-1977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 38,783.63 Da | 51.73 | 87.10 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 163 | 301 | 2.7E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 103 | 326 | 7.17E-42 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 159 | 340 | 5.2E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 102 | 158 | 9.3E-9 | - |
| SMART | SM00220 | serkin_6 | 114 | 312 | 1.7E-9 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 306 | 18.096479 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 163 | 175 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15730.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006373416.1 | calcium/calmodulin-regulated receptor-like kinase 2 isoform X1 [Populus trichocarpa] | 0 |
| Q9LFV3 | Calcium/calmodulin-regulated receptor-like kinase 2 OS=Arabidopsis thaliana OX=3702 GN=CRLK2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N5JEY7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40153 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24254 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035631 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21677, Sbi_jg22137 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16066 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008682, GOSA_00008684 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62616, Sgl67182 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020298, gene:ENSEOMG00000020931 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018010, CQ.Regalona.r1.2BG0019570 |
| Apiaceae | Apium graveolens | 1 | Ag4G00989 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706565 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2237.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G21432, Ftri18G08587, Ftri1G07951 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15730.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013581m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28390.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g047110.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0521 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0478 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07330 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.347 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023715 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02020 |
| Poaceae | Echinochloa crus-galli | 2 | AH06.1162, CH06.1327 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0517330, gene-QOZ80_6BG0469220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0671890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029441 |
| Poaceae | Oryza coarctata | 1 | Oco12G007430 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g17285.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G119100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0404424 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G017860, Chr14G005580, Chr21G005130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G386100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG026840, gene_TRIDC7BG017380 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G213000.1, TraesCS7B02G119700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb380640_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-45578, nbis-gene-55451 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29500, Zma_g31750 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.714, evm.TU.LG25.608 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1679, evm.TU.Scaffold_6_RagTag.411 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15317, nbisL1-mrna-1977, nbisL1-mrna-2123 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5073, nbisL1-mrna-6721 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2878, nbisL1-mrna-325 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.221, evm.TU.utg000019l.220 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001637, Maker00006844 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13043, nbisL1-mrna-3819 |
| Salicaceae | Populus euphratica | 2 | populus_peu09399, populus_peu09424 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621345 |
| Solanaceae | Solanum chilense | 1 | SOLCI003995700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011453 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6314 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0120 |
| Zosteraceae | Zostera marina | 4 | Zosma02g21030.v3.1, Zosma03g20500.v3.1, Zosma03g20530.v3.1 ... |