Basic Information
Locus ID:
nbisL1-mrna-19761
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000181F_pilon | 2964506 | 2966739 | - | nbisL1-mrna-19761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 37,900.58 Da | 51.77 | 89.77 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52058 | L domain-like | 4 | 47 | 6.8E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 63 | 3.4E-9 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 135 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_034921078.1 | receptor protein kinase TMK1-like [Populus alba] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4V6AA19 | Putative receptor protein kinase TMK1 OS=Populus alba OX=43335 GN=D5086_0000094830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah035048 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G003140 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29654.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19770.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g043510.2N, BniB06g049840.2N, BniB07g004410.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq07G0586, Ceq07G0670, Ceq07G0689 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0667, Cgl07G0681 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300088 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44088 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12693 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19761 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.734 |