Basic Information
Locus ID:
nbisL1-mrna-19746
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000181F_pilon | 2796466 | 2799454 | - | nbisL1-mrna-19746 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 19,043.98 Da | 44.47 | 84.05 | -0.45 |
Protein Domain:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_016470862.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Nicotiana tabacum] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | V4SXN3 | RBR-type E3 ubiquitin transferase OS=Citrus clementina OX=85681 GN=CICLE_v10012327mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah025137 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000017279 |
| Apiaceae | Apium graveolens | 2 | Ag5G02704, Ag8G01154 |
| Brassicaceae | Brassica nigra | 1 | BniB02g032340.2N |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G006520 |
| Poaceae | Zea mays | 9 | Zm00001eb177610_P001, Zm00001eb186210_P001 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.214 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19746 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003664 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17967 |