Basic Information
Locus ID:
nbisL1-mrna-19737
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Tho complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 13191028 | 13196474 | - | nbisL1-mrna-19737 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 35,279.25 Da | 24.22 | 77.40 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 13 | 297 | 1.34519E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 15 | 48 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 62 | 96 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 189 | 220 | 0.0053 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 297 | 1.33E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 153 | 1.1E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 154 | 310 | 2.4E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 265 | 303 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 10 | 49 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 96 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 4.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 178 | 77.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 262 | 1.5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 63 | 101 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 63 | 105 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 188 | 222 | 9.889235 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 229 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 51 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 17 | 51 | 11.286501 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 83 | 97 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 36 | 50 | 2.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 207 | 221 | 2.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 83 | 97 | 2.4E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56130.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | 0 |
| RefSeq | XP_012066257.1 | THO complex subunit 3 isoform X2 [Jatropha curcas] | 0 |
| Q9FKT5 | THO complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=THO3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JSP7 | WD_REPEATS_REGION domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24647 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12091 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007726 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g160810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25234, Sbi_jg9078 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19515 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00007192, GOSA_00007193, GOSA_00011268 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl43254, Sgl43828, Sgl48082, Sgl48594 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009929, gene:ENSEOMG00000032802 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013780, CQ.Regalona.r1.8BG0015120 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30120940, pistato.v30150750 |
| Apiaceae | Apium graveolens | 1 | Ag3G02416 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011130 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702358 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3534.V1.1, AsparagusV1_03.1648.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G24820 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G56130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014152m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g17980.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g034940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1559 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1723 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07900 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0156s00021.v1.0, Dusal.1492s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g08570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1498 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2115 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037989 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1474, BH03.1627, CH03.1780 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0531330, gene-QOZ80_6BG0485130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0471850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004428 |
| Poaceae | Oryza coarctata | 3 | Oco06G017230, Oco17G002080, Oco18G002030 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g32020.1, LOC_Os09g12710.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G142500, gene-BS78_04G038900 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702693 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G012490, Chr11G009720, Chr14G011980 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G302900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG029060, gene_TRIDC5BG030580 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G178200.2, TraesCS5B02G175900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb309300_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35485, nbis-gene-47931 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30138 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.670, evm.TU.LG09.1836 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.21 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19737 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3023 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22380 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.11 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010788 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7966 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22549 |
| Salicaceae | Populus euphratica | 1 | populus_peu00025 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618560 |
| Solanaceae | Solanum chilense | 1 | SOLCI002464400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026158 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16945 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0588 |
| Zosteraceae | Zostera marina | 1 | Zosma03g28940.v3.1 |