Basic Information
Locus ID:
nbisL1-mrna-19692
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 1071075 | 1073658 | - | nbisL1-mrna-19692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 62,154.23 Da | 47.77 | 99.83 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 40 | 6.1E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 52 | 9.03E-12 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 120 | 329 | 5.78E-13 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 43 | 3.9E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 88 | 409 | 2.3E-13 | IPR032675 |
| SMART | SM00256 | fbox_2 | 7 | 47 | 1.5E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 36 | 10.451268 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13570.2 | - | 0 |
| RefSeq | XP_021651842.1 | putative FBD-associated F-box protein At5g56410 [Hevea brasiliensis] | 0 |
| Q9FJC1 | Putative FBD-associated F-box protein At5g53635 OS=Arabidopsis thaliana OX=3702 GN=At5g53635 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6P9EYU6 | F-box/LRR-repeat protein At3g03360-like OS=Juglans regia OX=51240 GN=LOC109018596 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology