Basic Information
Locus ID:
nbisL1-mrna-19680
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 12700542 | 12703307 | + | nbisL1-mrna-19680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 43,091.48 Da | 32.07 | 88.96 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 212 | 325 | 1.9E-12 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 33 | 109 | 4.0E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 179 | 326 | 3.53E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 29 | 170 | 2.88E-16 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 20 | 177 | 2.5E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 197 | 325 | 2.8E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 222 | 326 | 7.6E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 22 | 170 | 10.611813 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 184 | 323 | 9.119835 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 375 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_021653752.1 | - | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2Q2U4 | Fasciclin-like arabinogalactan protein 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology