Basic Information
Locus ID:
nbisL1-mrna-19668
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 1738683 | 1741639 | - | nbisL1-mrna-19668 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 61,238.88 Da | 42.34 | 83.32 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 39 | 162 | 2.07361E-17 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 322 | 358 | 7.2E-9 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 84 | 186 | 2.9E-22 | IPR001480 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 398 | 508 | 2.52E-5 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 83 | 179 | 1.18E-15 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 22 | 159 | 2.0E-14 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 401 | 504 | 3.0E-7 | - |
| SMART | SM00108 | blect_4 | 27 | 162 | 5.8E-6 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 27 | 155 | 12.184923 | IPR001480 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 536 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16030.3 | - | 0 |
| RefSeq | XP_020535352.1 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas] | 0 |
| Q9LW83 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana OX=3702 GN=CES101 PE=2 SV=2 | 0 | |
| TrEMBL | B9RQP9 | Receptor-like serine/threonine-protein kinase OS=Ricinus communis OX=3988 GN=RCOM_1494620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah018508 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044267 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30036830, pistato.v30036880, pistato.v30036890 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67520.1, AT3G16030.1 |
| Brassicaceae | Brassica nigra | 3 | BniB01g048880.2N, BniB03g025090.2N, BniB07g053710.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005846 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.496 |
| Rhizophoraceae | Carallia pectinifolia | 8 | nbisL1-mrna-27876, nbisL1-mrna-27877, nbisL1-mrna-27878 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10731, nbisL1-mrna-10732 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7927 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21281 |