Basic Information
Locus ID:
nbisL1-mrna-19663
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 1941614 | 1942681 | - | nbisL1-mrna-19663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 39,006.83 Da | 29.73 | 76.79 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 160 | 201 | 4.9E-8 | IPR006652 |
| Pfam | PF00646 | F-box domain | 5 | 47 | 1.8E-4 | IPR001810 |
| Pfam | PF13964 | Kelch motif | 106 | 155 | 3.5E-9 | - |
| SUPERFAMILY | SSF117281 | Kelch motif | 79 | 337 | 8.37E-41 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 56 | 1.83E-9 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 43 | 348 | 2.5E-40 | IPR015915 |
| SMART | SM00256 | fbox_2 | 7 | 47 | 4.4E-6 | IPR001810 |
| SMART | SM00612 | kelc_smart | 168 | 215 | 9.2E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 117 | 165 | 3.9E-6 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021635810.1 | F-box/kelch-repeat protein At1g80440-like [Hevea brasiliensis] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6NC87 | F-box/kelch-repeat protein OS=Hevea brasiliensis OX=3981 GN=GH714_034558 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology