Basic Information
Locus ID:
nbisL1-mrna-19662
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001769F_pilon | 22131 | 32355 | + | nbisL1-mrna-19662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 52,621.95 Da | 55.36 | 70.35 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 132 | 176 | 1.9E-7 | IPR018957 |
| Pfam | PF17979 | Cysteine rich domain with multizinc binding regions | 251 | 414 | 5.8E-49 | IPR040909 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 183 | 4.01E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 212 | 3.0E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.140 | - | 215 | 309 | 1.7E-13 | - |
| SMART | SM00184 | ring_2 | 132 | 176 | 1.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 177 | 12.149959 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47570.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034917138.1 | E3 ubiquitin-protein ligase CHFR [Populus alba] | 0 |
| TrEMBL | A0A6M2FAA8 | RING-type domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39732 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9927 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006400 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16548, Sbi_jg61071 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22824 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008109 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24974, Sgl30122 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009684, gene:ENSEOMG00000028294 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0011810, CQ.Regalona.r1.4BG0012170 |
| Apiaceae | Apium graveolens | 1 | Ag4G01922 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002440 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701290 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1166.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G04642, Ftri12G13086 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G47570.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g007640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1421 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1483 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07500 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g19070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2539 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00023469, Pov_00029459, Pov_00029461 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G21771, Lb4G21789 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.448, BH04.487, CH04.484 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671160, gene-QOZ80_9BG0694570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0348810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064652 |
| Poaceae | Oryza coarctata | 1 | Oco21G002310 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g07450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G083100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104154, Pt_Chr0104204 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G020510, Chr16G010230, Chr17G009320, Chr31G001680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G147000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG035530, gene_TRIDC4BG014520 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G222800.1, TraesCS4B02G093600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb200940_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27159 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18484 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.438, evm.TU.LG22.1449 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g19600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.828 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1008, nbisL1-mrna-1010 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15084 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6503 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.704 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012514 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5167 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19662 |
| Salicaceae | Populus euphratica | 3 | populus_peu09268, populus_peu19703, populus_peu37619 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637594 |
| Solanaceae | Solanum chilense | 1 | SOLCI002868600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012180 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5564 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2005 |
| Zosteraceae | Zostera marina | 1 | Zosma04g14880.v3.1 |