Basic Information
Locus ID:
nbisL1-mrna-19655
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000181F_pilon | 2050081 | 2051913 | + | nbisL1-mrna-19655 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 68,109.19 Da | 41.81 | 90.00 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 177 | 221 | 0.00496363 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 365 | 604 | 3.0E-21 | IPR001245 |
| SUPERFAMILY | SSF54106 | LysM domain | 177 | 222 | 7.19E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 327 | 606 | 2.2E-34 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 176 | 227 | 4.4E-6 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 326 | 413 | 2.2E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 416 | 610 | 1.2E-28 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 177 | 221 | 8.872849 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 271 | 610 | 16.372131 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_002313523.2 | lysM domain receptor-like kinase 4 [Populus trichocarpa] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | B9HQC6 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G010300 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg18800, jg18801, jg8243 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30058330, pistato.v30140100 |
| Apiaceae | Apium graveolens | 2 | Ag5G00714, Ag6G02262 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1584.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17600, Ftri12G19165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014588 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.389 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24355, nbisL1-mrna-24447 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13610 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19655 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.147 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18995 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11876 |
| Salicaceae | Populus euphratica | 4 | populus_peu28725, populus_peu28732, populus_peu28741 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599446, gene-LOC132600290 |
| Solanaceae | Solanum chilense | 1 | SOLCI003959800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004454 |