Basic Information
Locus ID:
nbisL1-mrna-19647
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 12437122 | 12443222 | - | nbisL1-mrna-19647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 168,467.30 Da | 34.87 | 103.97 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 328 | 615 | 4.0443E-103 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 952 | 1245 | 8.55317E-95 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1268 | 1488 | 9.05297E-117 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 641 | 841 | 1.57963E-110 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 954 | 1195 | 3.8E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1288 | 1435 | 3.3E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 327 | 594 | 6.2E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 659 | 793 | 5.5E-20 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 638 | 863 | 5.12E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1262 | 1500 | 2.76E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 952 | 1252 | 3.92E-53 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 318 | 619 | 3.01E-31 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 300 | 623 | 3.3E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 917 | 1251 | 6.3E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1253 | 1506 | 8.0E-81 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 624 | 880 | 3.6E-75 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1296 | 1488 | 2.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 668 | 841 | 5.0E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 327 | 607 | 32.85429 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 641 | 864 | 22.842577 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 954 | 1233 | 37.037373 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1270 | 1504 | 18.714279 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 766 | 780 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 894 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021606750.2 | ABC transporter C family member 3 isoform X1 [Manihot esculenta] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NFS0 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology