Basic Information
Locus ID:
nbisL1-mrna-19638
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Protein transport protein Sec24-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 12351554 | 12359017 | + | nbisL1-mrna-19638 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 18,424.48 Da | 35.31 | 116.39 | 0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04815 | Sec23/Sec24 helical domain | 73 | 162 | 1.3E-16 | IPR006900 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 2 | 69 | 1.75E-17 | - |
| SUPERFAMILY | SSF81811 | Helical domain of Sec23/24 | 73 | 163 | 1.02E-18 | IPR036175 |
| Gene3D | G3DSA:2.60.40.1670 | - | 1 | 57 | 6.1E-17 | - |
| Gene3D | G3DSA:1.20.120.730 | Sec23/Sec24 helical domain | 58 | 166 | 4.0E-23 | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07100.1 | Sec23/Sec24 protein transport family protein. Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology. | 0 |
| RefSeq | XP_002533043.2 | protein transport protein Sec24-like At3g07100 [Ricinus communis] | 0 |
| Q9SFU0 | Protein transport protein SEC24 A OS=Arabidopsis thaliana OX=3702 GN=SEC24A PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2ISM3 | Protein transport protein Sec24-like At3g07100 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G041700, Tel2E01G041800, Tel2E01G041900 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.49335.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19638 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22614 |