Basic Information
Locus ID:
nbisL1-mrna-19630
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000181F_pilon | 1834253 | 1839262 | + | nbisL1-mrna-19630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 41,356.27 Da | 57.67 | 87.75 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 126 | 174 | 2.61495E-13 | - |
| Pfam | PF12906 | RING-variant domain | 126 | 173 | 2.9E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 177 | 1.57E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 182 | 3.6E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 125 | 174 | 7.9E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 118 | 180 | 18.565241 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 68 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021657114.1 | uncharacterized protein LOC110647532 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2L5S7 | RING-CH-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology