Basic Information
Locus ID:
nbisL1-mrna-19615
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 12183774 | 12191873 | + | nbisL1-mrna-19615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 97,502.31 Da | 44.14 | 93.34 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 371 | 702 | 1.23159E-160 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 55 | 353 | 1.27618E-162 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 376 | 697 | 4.2E-31 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 90 | 347 | 3.8E-6 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 370 | 703 | 1.15E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 55 | 353 | 7.06E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 369 | 702 | 6.3E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 54 | 353 | 2.8E-35 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 55 | 354 | 33.801605 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 370 | 703 | 38.405701 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 785 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_002529027.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Ricinus communis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K3S5 | glycerophosphodiester phosphodiesterase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology